GCC 8.2.0

Install directory: /Share/home/zhangqf/lipan/usr/gcc-8.2.0

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_g++.sh

Anaconda3

Install directory: /Share/home/zhangqf/lipan/usr/anaconda3

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_anaconda3.sh

Anaconda2

Install directory: /Share/home/zhangqf/lipan/usr/anaconda2

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_anaconda2.sh

GAP

Install directory: /Share/home/zhangqf/lipan/usr/GAP

Add to PATH: export PYTHONPATH=/Share/home/zhangqf/lipan/usr/GAP:$PYTHONPATH

Main page: github

icSHAPE-pipe

Install directory: /Share/home/zhangqf/lipan/usr/icSHAPE-pipe

Add to PATH: export PATH=/Share/home/zhangqf/lipan/usr/icSHAPE-pipe/bin:$PATH

Main page: github

IPyRSSA

Install directory: /Share/home/zhangqf/lipan/usr/IPyRSSA

Add to PATH: export PYTHONPATH=/Share/home/zhangqf/lipan/usr/IPyRSSA:$PYTHONPATH

Main page: github

RNAstructure

Install directory: /Share/home/zhangqf/lipan/usr/RNAstructure

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_RNAStructure.sh

Main page: RNAstructure

MC-Sym

Install directory: /Share/home/zhangqf/lipan/usr/MC-Tools

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_MCSym.sh

Main page: online version

Java 11

Install directory: /Share/home/zhangqf/lipan/usr/jdk/jdk-11.0.5

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_java11.sh

It includes java 11.0.5 and JRE 18.9

IGV Command Line

Install directory: /Share/home/zhangqf/lipan/usr/IGV/IGV_2.7.2

Add to PATH: source /Share/home/zhangqf/lipan/Load_Env/load_igv.sh

IGV default configure path: $HOME/igv

Caution: Load Java 11 before using IGV. IGV can be run with command igv.sh
On Mac OS system: you should sudo vi /etc/ssh/ssh_config to add ForwardX11 yes command. And add -Y option in ssh command. Check your $DISPLAY variable once you login